mail about autoionize plugin

From: Vidhya Sankar (
Date: Thu Jul 26 2018 - 08:34:43 CDT

Hello Namd users
when i use the following command to neutralize command
autoionize -psf tutmemprot3.psf -pdb newtutmem2.pdb -neutralize

Autoionize) Reading tutmemprot3.psf/newtutmem2.pdb...
clearing structure, preserving topology and aliases
reading structure from psf file tutmemprot3.psf
Error processing angles

But my system run well in dynamics without any error  should i neutralize or not

With regards

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