mail about constraints in namd configuration file

From: Vidhya Sankar (
Date: Thu Jun 21 2018 - 07:52:17 CDT

Dear namd user
                            i would like to constraint protein atoms above lipid leaflets but when i run equilibration,   the protein molecules buried inside lipid leaflets..         Which parameters should i increase to keep my protein molecules fixed above lipid leafletes throughout equilibration  in namd configuration file

The deault value i am using   in configuration file

consexp 2

constraintScaling  1.0

with regards

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