Re: metadynamics run in NAMD or using plumed in NAMD

From: Rabeta Yeasmin (
Date: Fri Dec 08 2017 - 02:06:22 CST

Dear all,

Thank you very much for all of your information. I am wondering if I can
run bias-exchange metadynamics on NAMD using colvar module and how can I
analyze results of metadynamics. In the tutorial, they had shown plotting
pmf. But if I want to find the kinetic basins, how can I get it.
I have found one program META-GUI for analyzing metadynamics results which
is based on plumed output version. I am wondering if I can that program to
analyze metadynamics from NAMD.

Rabeta Yeasmin

On Thu, Dec 7, 2017 at 5:49 PM, Rabeta Yeasmin <>

> Dear NAMD users,
> I am trying to run metadynamics in NAMD. I have searched online for
> related information. I have found one tutorial in NAMD tutorial and also
> found something like-running metadynamics using plumed version- in NAMD
> version-. I am wondering if these two methods are same or not. If yes, how
> am I going to use plumed with NAMD.
> Thanks.
> Rabeta Yeasmin

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