(no subject)

From: Shahee Islam (shaheeislam726_at_gmail.com)
Date: Fri Dec 01 2017 - 02:28:17 CST

I am doing simulation of two proteins system in namd.But after 150 ns of
the simulation one protein is going away from the another protein due to
pbc.After this i have done recentreing of the proteins but having problem
during the analysis(by charmm) of distance between the centre of geometry
of the two proteins as part of a one protein is on the opposite parallel
face of the box.
Water box size 73.0 72.0 72.0
Protein size 30.42 31.75 31.30(measure from vmd)
Thanking you

Shahee Islam
University of calcutta
department of chemistry

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