Re: RMSD of backbone changes rapidly at the beginning of production run

From: Monika Madhavi (monikamadhavi_at_gmail.com)
Date: Fri Nov 03 2017 - 18:45:34 CDT

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Hi Fidan,

I am using the files from previously equilibrium system to start the
production run.

Best regards,
Monika

On Fri, Nov 3, 2017 at 9:27 PM, Fidan Sumbul <fidansumbul_at_gmail.com> wrote:

> Hi Monica,
>
> I think you are wondering why the RMSD is changing while you are keeping
> the backbone of you protein during the minimization. But I don’t see any
> minimization step in your configuration file. You just used “run” without
> any minimization.
>
> Cheers!
>
> FIDAN SUMBUL
> Fidan Sumbul, PhD
> Postdoctoral Researcher
> U1006 INSERM
>
> Parc Scientifique et Technologique de Luminy
> Bâtiment Inserm TPR2 bloc 5
> 163 avenue de Luminy
> 13009 Marseille
> France
>
>

-- 
W.A.Monika Madhavi
Lecturer (Probation),
Department of Physics,
University of Colombo.

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