From: Florian Blanc (blanc.flori_at_gmail.com)
Date: Mon Oct 23 2017 - 06:03:14 CDT
Isn't it that you are looking at a non-wrapped trajectory? Try enabling
wrapAll in the NAMD configuration file.
On 10/23/2017 12:57 PM, ThatMind TV wrote:
> Hello everyone
> I am doing a RBCG simulation on NAMD, in which water atoms keep
> exploding out of solvate box. And by proceeding through loops, this
> water explosion increases, and my molecules in the middle of this
> water explosion look like, for instance, a tiny dot in an enormous
> background of expanded water atoms. Please let me know how to avoid
> this water atoms' explosion! Any kind of help would be appreciated.
> Behzad Aslani Avilaq
> behzadsln_at_gmail.com <mailto:behzadsln_at_gmail.com>
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