building system with or without water for metadynamics

From: Rabeta Yeasmin (
Date: Tue Oct 17 2017 - 16:52:38 CDT

Dear NAMD users,

I am trying to run meta-dynamics to find binding sites between a protein
and a ligand. I am wondering if I should include water in the system. In
the NAMD metadynamics tutorial files, there was no water in the system.
That's why I am confused if I should build the system with or without water.

Thanks very much.

Rabeta Yeasmin

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