From: Vidhya Sankar (vidhyasankar7928_at_yahoo.com)
Date: Sat Aug 12 2017 - 23:51:25 CDT
Thank you Namd users and chitrak gupta for your valuable suggestion about setting of periodic boundary condition for My system
For your reminder .
My system contain Assembly of cyclic peptide placed 2 Armstrong Distance above the Z axis of Lipid Membrane
Lipid Membrane .
But when i run protein constrained equilibration , My water molecules on the head of lipid diffused upwards along assembly.Could you please suggest How can i solve the problem ? Is it possible by editing keep_water_out.tcl script . if it can which part of the tcl script should i edit ?
I Request your valuable suggestion
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