FATAL ERROR: UNABLE TO FIND BOND PARAMETERS FOR CG321 CTL3 (ATOMS 8773 8776)

From: Arthur Vale (arthurovale_at_uchicago.edu)
Date: Thu Jul 20 2017 - 20:08:28 CDT

Dear All,

I'm trying to run a protein-membrane system in namd. Whenever I try to run it I get the following error:

FATAL ERROR: UNABLE TO FIND BOND PARAMETERS FOR CG321 CTL3 (ATOMS 8773 8776)

These atoms (after checking in the psf) belong to CLOL molecules. The parameter files I'm using are as follow:

Info: PARAMETERS ../toppar/par_all36_prot.prm
Info: PARAMETERS ../toppar/par_all36_na.prm
Info: PARAMETERS ../toppar/par_all36_carb.prm
Info: PARAMETERS ../toppar/par_all36_lipid.prm
Info: PARAMETERS ../toppar/par_all36_cgenff.prm
Info: PARAMETERS ../toppar/toppar_all36_lipid_cholesterol.str
Info: PARAMETERS ../toppar/toppar_all36_lipid_hmmm.str
Info: PARAMETERS ../toppar/par_scs.prm
Info: PARAMETERS ../toppar/toppar_water_ions.str

Which parameter file am I missing?

Thank you in advance,

Arthur Vale

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