From: Dhiraj Srivastava (dhirajks_at_gmail.com)
Date: Mon Jul 03 2017 - 16:33:17 CDT
I want to simulate my protein to sample different domain
conformations that I can use for docking. I want to keep the two domain
rigid and the two linkers flexible as I am expecting the domain motion of
almost 80 A or 180 degree rotation around the hinge.
I read that GSA might be helpful in this situation and its implemented in
NAMD but I am not finding a good manual or tutorial about it.
does anyone have any suggestion or manual/tutorial on GSAfold in NAMD?
This archive was generated by hypermail 2.1.6 : Mon Dec 31 2018 - 23:20:24 CST