[NAMD] How to build and simulate a periodic DNA in NAMD

From: The Cromicus Productions (thecromicusproductions_at_gmail.com)
Date: Sat May 06 2017 - 13:14:34 CDT

Hi everyone,

I'd like to simulate an infinitely long, periodic dsDNA in NAMD.
To do so I read in Nano Lett., 2015, 15 (12), pp 8322–8330 that I must
covalently bond the ends of the DNA to their periodic copies.
Any idea of which would be the easiest way to do this?

Thank you very much,


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