Re: atom selection error

From: Shahee Islam (
Date: Fri Dec 08 2017 - 08:22:51 CST

Thank you so much for your reply.i want to calculate the rmsd of
backbone.And Still when I try to recentering the coarse grained proteins
,the atoms are not selecting.

On Dec 8, 2017 7:29 PM, "Peter Freddolino" <> wrote:

> You would need to send much more information on how you're trying to
> calculate the RMSD. My wild guess is that you're looking for alpha carbon
> or recognizable backbone atoms when none exist.
> On Fri, Dec 8, 2017 at 3:33 AM, Shahee Islam <>
> wrote:
>> Hi,
>> i have prepared my system according to rbcg tutorial.Now i want to
>> analyse my system by vmd,but during the analysis(rmsd) atoms are not
>> selected and also in the time of recentering of proteins.Can anyone please
>> help me why this is happening.
>> Also i want to know is there any other method to analyse the coarse
>> grained system(which is made according to rbcg tutorial).
>> Thankig you
>> Shahee Islam
>> University of calcutta
>> Department of chemistry

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