From: Vermaas, Joshua (Joshua.Vermaas_at_nrel.gov)
Date: Thu Aug 31 2017 - 11:25:10 CDT
If NAMD is giving you that warning, I'm 99% sure that your psf file
*does* contain ON1 somewhere. Load your psf file first, then your PDB,
and search for "type ON1" within VMD. You'll find your atoms pretty
quick (should be carbonyl oxygens within nucleic acids). You may have
just not added in the nucleic acid parameters your system needs.
On 08/31/2017 04:59 AM, Natasha Gupta wrote:
>> I am trying to run minimization but am seeing the following error:
>> FATAL ERROR: DIDN'T FIND vdW PARAMETER FOR ATOM TYPE ON1
>> My psf file does not have an atom type, "ON1". Has anyone seen this before? I would appreciate any suggestions.
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