Re: colvar distanceInv not propagated with a harmonic moving restraint in NAMD 2.12

From: Giacomo Fiorin (giacomo.fiorin_at_gmail.com)
Date: Tue May 16 2017 - 12:18:18 CDT

Jim usually adds these fixes as soon as he sees them, I'll send him a
reminder in case he isn't monitoring this thread.

Giacomo

On Tue, May 16, 2017 at 11:50 AM, Vlad Cojocaru <
vlad.cojocaru_at_mpi-muenster.mpg.de> wrote:

> Thanks Giacomo,
>
> Any idea when this should make it to the NAMD nightly builds ?
>
> Cheers
> Vlad
>
>
>
> On 05/16/2017 04:39 PM, Giacomo Fiorin wrote:
>
> Hi Vlad, I just fixed the error is fixed here:
> https://github.com/colvars/colvars/commit/fd7445328d5f670863
> 690869bf95716dce8a1dd8
>
> Thanks you for reporting it.
>
> Giacomo
>
> On Tue, May 16, 2017 at 10:08 AM, Jérôme Hénin <jerome.henin_at_ibpc.fr>
> wrote:
>
>> Hi Vlad,
>>
>> Thanks a lot for your report. I have identified the problem and created
>> an issue in our tracker:
>> https://github.com/colvars/colvars/issues/118
>> <https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_colvars_colvars_issues_118&d=DwMFaQ&c=8hUWFZcy2Z-Za5rBPlktOQ&r=6cQ04kjNHUuxT8SDe1wb0TtPDsnWRp4T4iwoYRLFpsY&m=5ox-4AZPajCsXBpGUt65Ufg0fpmKUsB_Ikn-xKQNdSQ&s=IvVxSAUBZzWS2eh7RuM8ASxL4QMYrwzvzf9RTUSXkNY&e=>
>>
>> The distanceInv function is wrongly identified as depending only on the
>> groups' centers of mass.
>>
>> As a workaround until it gets fixed, you can specify "scalable off"
>> within the distanceInv block.
>>
>> Best,
>> Jerome
>>
>> On 16 May 2017 at 15:20, Vlad Cojocaru <vlad.cojocaru_at_mpi-muenster.mpg.de
>> > wrote:
>>
>>> I should add here that NAMD 2.11 also performs the simulation correctly--001a1148bd74fef386054fa75dae--

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