Best NAMD distribution for COEUS cluster?

From: Bassam Haddad (bhaddad_at_pdx.edu)
Date: Thu Apr 13 2017 - 15:27:10 CDT

Hello All,

There is a new cluster installed at my university, and I would like to
perform MD simulations on it. currently both KNL-multi-core, and
x86_64-multi-core versions are installed on it.

>From what I could gather, the multi-core distributions are meant for a
single node, and are not for multi-node parallelization.

The 'Coeus HPC Cluster' is equipped with Xeon CPU's, Phi processors, and
Omni-Path.
https://www.pdx.edu/oit/linux-parallel-computing-clusters

Which NAMD distribution should I have installed on the cluster.

Thank you all for your time!

Bassam Haddad

Portland State University (Ph.D.)
Western Washington University (B.S.)

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