From: Sourav Ray (souravray90_at_gmail.com)
Date: Sun Nov 20 2016 - 17:12:02 CST
This is the more detailed version of same:
http://mackerell.umaryland.edu/~kenno/cgenff/program.php#namd
Regards
Sourav
On Mon, Nov 21, 2016 at 10:10 AM, Sourav Ray <souravray90_at_gmail.com> wrote:
> Hi Matthew
>
> This should help, remember to include all parameter files even if it's not
> relevant for your system.
>
> http://mackerell.umaryland.edu/charmm_ff.shtml
> http://mackerell.umaryland.edu/~kenno/cgenff/downloader.
> php?filename=toppar_water_ions_namd.str
>
> Regards
> Sourav
>
> On Mon, Nov 21, 2016 at 4:29 AM, matthew reeves <mreeves94_at_gmail.com>
> wrote:
>
>> Hello,
>>
>> I’m attempting to run a NAMD simulation on a small section of the human
>> growth hormone, but I get the following error message.
>>
>> Charm++ fatal error: DIDN'T FIND vdW PARAMETER FOR ATOM TYPE HB1
>>
>> It has come to my attention that I require the par_all36_prot.prm file
>> but I have no idea how to go about obtaining it. Can anyone tell me where
>> to get this parameter from?
>>
>> Thanks
>> Matthew.
>>
>
>
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