Help about Drude Prepper

From: Francesco Pietra (chiendarret_at_gmail.com)
Date: Tue Jun 07 2016 - 10:06:48 CDT

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Hello:
Submitted to CHARMM-GUI Drude Prepper server .psf generated with psfgen and
.pdb equilibrated with NAMD in a rectangular TIP3P water box.

Drude Prepper reads, in sequence, the .psf file, all topology files and
all segments, then it applies patches, dying at this stage:

TITLE> REMARKS defaultpatch NTER PRA:6
 TITLE> REMARKS patch CTER PRA:190
 TITLE> REMARKS defaultpatch NTER C203:203
 TITLE> REMARKS defaultpatch CTER C203:203
 TITLE> REMARKS defaultpatch NTER C204:204
 TITLE> REMARKS defaultpatch CTER C204:204
 TITLE> REMARKS defaultpatch NTER C205:205
 TITLE> REMARKS defaultpatch CTER C205:205
 TITLE> REMARKS defaultpatch NTER C206:206
 TITLE> REMARKS defaultpatch CTER C206:206
 TITLE> REMARKS defaultpatch NTER C207:207
 TITLE> REMARKS defaultpatch CTER C207:207
 TITLE> REMARKS defaultpatch NTER C208:208
 TITLE> REMARKS defaultpatch CTER C208:208
 TITLE> REMARKS defaultpatch NTER C209:209
 TITLE> REMARKS defaultpatch CTER C209:209
 TITLE> REMARKS defaultpatch NTER C210:210
 TITLE> REMARKS defaultpatch CTER C210:210
 TITLE> REMARKS defaultpatch NTER C211:211
 TITLE> REMARKS defaultpatch CTER C211:211
 TITLE> REMARKS defaultpatch NTER C212:212
 TITLE> REMARKS defaultpatch CTER C212:212
 TITLE> REMARKS patch CA-S PRA:93 PRA:157
 TITLE> *

That occurred with either XPLOR/NAMD or CHARMM/NAMD format couples.

thanks for any help

francesco pietra

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