Re: segmentation fault in ABF simulations

From: Azadeh Alavi (azade.alavi_at_gmail.com)
Date: Mon Jan 25 2016 - 11:00:26 CST

Dear Jerome

Thank you very much for your reply. I am using NAMD 2.10 for
Linux-x86_64-multicore, and version 2014-10-23 of colvar.

Best regards,
Azadeh

On Mon, Jan 25, 2016 at 5:44 PM, Jérôme Hénin <jerome.henin_at_ibpc.fr> wrote:

> Hi Azadeh,
>
> What version of NAMD and colvars are you using?
>
> Best,
> Jerome
>
> On 25 January 2016 at 14:58, Azadeh Alavi <azade.alavi_at_gmail.com> wrote:
>
>> Dear NAMD users
>>
>> I am performing MD simulations of a membrane-protein system. The problem
>> is that in my ABF simulations, the run stops with the segmentation fault. I
>> do not have the memory problem.
>>
>> The last few lines of the .log file are as below:
>>
>> Info: useSync: 1 useProxySync: 0
>> Info: Startup phase 10 took 0.0123789 s, 1217.61 MB of memory in use
>> Info: Startup phase 11 took 0.000143051 s, 1217.61 MB of memory in use
>> Info: Startup phase 12 took 0.000791073 s, 1217.83 MB of memory in use
>> Info: Finished startup at 22.5293 s, 1217.83 MB of memory in use
>>
>> TCL: Running for 1000000 steps
>>
>>
>>
>> Thank you very much for your help.
>>
>> Best regards,
>> Azadeh
>>
>
>

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