From: Downs, Andrew S CTR USARMY ARL (US) (andrew.s.downs3.ctr_at_mail.mil)
Date: Tue Jan 12 2016 - 09:44:54 CST
CLASSIFICATION: UNCLASSIFIED
./build charm++ mpi-crayxc -O -DCMK_OPTIMIZE=1
I can build charm++ with intel or gnu with no problems. My troubles start when I try to "make" the rest of NAMD.
Thanks for your help.
-Andrew Downs
-----Original Message-----
From: Norman Geist [mailto:norman.geist_at_uni-greifswald.de]
Sent: Tuesday, January 12, 2016 9:32 AM
To: namd-l_at_ks.uiuc.edu; Downs, Andrew S CTR USARMY ARL (US) <andrew.s.downs3.ctr_at_mail.mil>
Subject: AW: [Non-DoD Source] AW: namd-l: Compilation error across Intel 14, 15 and 16 (UNCLASSIFIED)
No really, tell us how you built charm++.
Norman Geist
> -----Ursprüngliche Nachricht-----
> Von: owner-namd-l_at_ks.uiuc.edu [mailto:owner-namd-l_at_ks.uiuc.edu] Im
> Auftrag von Downs, Andrew S CTR USARMY ARL (US)
> Gesendet: Dienstag, 12. Januar 2016 14:28
> An: Norman Geist <norman.geist_at_uni-greifswald.de>; namd-l_at_ks.uiuc.edu
> Betreff: RE: [Non-DoD Source] AW: namd-l: Compilation error across
> Intel
14,
> 15 and 16 (UNCLASSIFIED)
>
> CLASSIFICATION: UNCLASSIFIED
>
> Thanks for your reply, I should have explained more.
>
> In my example, I have already built charm++ so that module swap has
> already been done.
>
> PrgEnv-intel is loaded.
>
> A fellow researcher here previously build NAMD 2.10 on our XC40, so
> he's left it up to me to build 2.11.
> I've tried both intel and gnu compilers, both break at various points.
> All of our intel compilers break at the point in my original message.
> Gnu breaks at linkage towards the end.
> I'm not very concerned with gnu because the intel compilers produce
> faster code, which is why I only provided error output for intel.
>
> Thanks for your help.
>
> Andrew Downs
>
> -----Original Message-----
> From: Norman Geist [mailto:norman.geist_at_uni-greifswald.de]
> Sent: Tuesday, January 12, 2016 3:17 AM
> To: namd-l_at_ks.uiuc.edu; Downs, Andrew S CTR USARMY ARL (US)
> <andrew.s.downs3.ctr_at_mail.mil>
> Subject: [Non-DoD Source] AW: namd-l: Compilation error across Intel
> 14,
15
> and 16 (UNCLASSIFIED)
>
> Hey,
>
> I think we need at least the command line with which you are trying to
build
> charm++.
> This generally looks like not doing the right thing to build on cray
generally?
>
> Did you follow the instructions given by the maintainer of that cray
system?
>
> Something like:
>
> module switch PrgEnv-cray PrgEnv-intel
>
> Norman Geist
>
> > -----Ursprüngliche Nachricht-----
> > Von: owner-namd-l_at_ks.uiuc.edu [mailto:owner-namd-l_at_ks.uiuc.edu] Im
> > Auftrag von Downs, Andrew S CTR USARMY ARL (US)
> > Gesendet: Montag, 11. Januar 2016 20:10
> > An: namd-l_at_ks.uiuc.edu
> > Betreff: namd-l: Compilation error across Intel 14,15 and 16
> (UNCLASSIFIED)
> >
> > CLASSIFICATION: UNCLASSIFIED
> >
> > Hello,
> >
> > I get the same error regardless of which Intel compiler I use
> > between
> version
> > 14, 15 or 16. I'm compiling on a Cray XC-40.
> > What's strange is the errors I'm getting look like the code itself
> > is
> wrong, but I
> > know how unlikely that is. Please see below:
> >
> > intel compiler output:
> >
> > 1:54pm adowns : make
> >
> > found module rca/1.0.0-2.0502.53711.3.127.ari found module
> > PrgEnv-intel/5.2.40 if [ ! -d inc ]; then mkdir -p inc; fi if [ ! -f
> > inc/.exists ]; then touch inc/.exists; fi if [ ! -d obj ]; then
> > mkdir -p obj; fi if [ ! -f obj/.exists ]; then touch obj/.exists; fi
> > cp src/Node.ci inc .rootdir/charm-6.7.0/mpi-crayxc/bin/charmc
> > inc/Node.ci rm -f inc/Node.ci mv Node.def.h inc mv Node.decl.h inc
> > cp src/PatchMgr.ci inc .rootdir/charm-6.7.0/mpi-crayxc/bin/charmc
> > inc/PatchMgr.ci rm -f inc/PatchMgr.ci mv PatchMgr.def.h inc mv
> > PatchMgr.decl.h inc cp src/ComputeMoaMgr.ci inc
> > .rootdir/charm-6.7.0/mpi-crayxc/bin/charmc inc/ComputeMoaMgr.ci rm
> > -f inc/ComputeMoaMgr.ci mv ComputeMoaMgr.def.h inc mv
> > ComputeMoaMgr.decl.h inc cp src/ComputeMgr.ci inc
> > .rootdir/charm-6.7.0/mpi-crayxc/bin/charmc inc/ComputeMgr.ci rm -f
> > inc/ComputeMgr.ci mv ComputeMgr.def.h inc mv ComputeMgr.decl.h inc
> cp
> > src/WorkDistrib.ci inc .rootdir/charm-6.7.0/mpi-crayxc/bin/charmc
> > inc/WorkDistrib.ci rm -f inc/WorkDistrib.ci mv WorkDistrib.def.h inc
> > mv WorkDistrib.decl.h inc CC
> > -I.rootdir/charm-6.7.0/mpi-crayxc/include
> > -DCMK_OPTIMIZE=1 -Isrc -Iinc -Iplugins/include -DSTATIC_PLUGIN -
> > I/usr/cta/unsupported/NAMD/tcl8.5.9/include -DNAMD_TCL -
> > I.rootdir/fftw/include -DNAMD_FFTW -DNAMD_VERSION=\"2.11\" -
> > DNAMD_PLATFORM=\"CRAY-XC-MPI\" -
> > DREMOVE_PROXYRESULTMSG_EXTRACOPY -
> > DNODEAWARE_PROXY_SPANNINGTREE -DUSE_NODEPATCHMGR -
> > DUSE_CKLOOP=1 -O2 -ip -no-vec -o obj/ComputeMoa.o -c
> src/ComputeMoa.C
> > In file included from src/Node.h(16),
> > from src/ComputeMoa.C(25):
> > .rootdir/charm-6.7.0/mpi-crayxc/include/charm++.h(368): error:
> > expected an identifier
> > template <typename... Args>
> > ^
> >
> > In file included from src/Node.h(16),
> > from src/ComputeMoa.C(25):
> > .rootdir/charm-6.7.0/mpi-crayxc/include/charm++.h(369): error:
> > expected a ")"
> > CBaseT1(Args... args) : Parent(args...) { thisProxy = this; }
> > ^
> >
> > In file included from src/Node.h(16),
> > from src/ComputeMoa.C(25):
> > .rootdir/charm-6.7.0/mpi-crayxc/include/charm++.h(369): error: not a
> > valid member class or function template declaration
> > CBaseT1(Args... args) : Parent(args...) { thisProxy = this; }
> > ^
> >
> > In file included from .rootdir/charm-6.7.0/mpi-
> > crayxc/include/charm++.h(1037),
> > from src/Node.h(16),
> > from src/ComputeMoa.C(25):
> > .rootdir/charm-6.7.0/mpi-crayxc/include/ckmemcheckpoint.h(144): error:
> > no instance of constructor "CBaseT1<Parent, CProxy_Derived>::CBaseT1
> > [with Parent=Group, CProxy_Derived=CProxy_CkMemCheckPT]" matches
> the
> > argument list In file included from .rootdir/charm-6.7.0/mpi-
> > crayxc/include/charm++.h(1037),
> > from src/Node.h(16),
> > from src/ComputeMoa.C(25):
> > argument types are: (CkMigrateMessage *) In file
> > included from .rootdir/charm-6.7.0/mpi- crayxc/include/charm++.h(1037),
> > from src/Node.h(16),
> > from src/ComputeMoa.C(25):
> > CkMemCheckPT(CkMigrateMessage *m):CBase_CkMemCheckPT(m) {};
> > ^
> >
> > In file included from .rootdir/charm-6.7.0/mpi-
> > crayxc/include/cklocation.h(31),
> > from
> .rootdir/charm-6.7.0/mpi-crayxc/include/ckarray.h(29),
> > from
> .rootdir/charm-6.7.0/mpi-crayxc/include/charm++.h(1039),
> > from src/Node.h(16),
> > from src/ComputeMoa.C(25):
> > .rootdir/charm-6.7.0/mpi-crayxc/include/MetaBalancer.h(56): error:
> > no instance of constructor "CBaseT1<Parent, CProxy_Derived>::CBaseT1
> > [with Parent=Group, CProxy_Derived=CProxy_MetaBalancer]" matches the
> > argument list In file included from .rootdir/charm-6.7.0/mpi-
> > crayxc/include/cklocation.h(31),
> > from
> .rootdir/charm-6.7.0/mpi-crayxc/include/ckarray.h(29),
> > from
> .rootdir/charm-6.7.0/mpi-crayxc/include/charm++.h(1039),
> > from src/Node.h(16),
> > from src/ComputeMoa.C(25):
> > argument types are: (CkMigrateMessage *) In file
> > included from .rootdir/charm-6.7.0/mpi- crayxc/include/cklocation.h(31),
> > from
> .rootdir/charm-6.7.0/mpi-crayxc/include/ckarray.h(29),
> > from
> .rootdir/charm-6.7.0/mpi-crayxc/include/charm++.h(1039),
> > from src/Node.h(16),
> > from src/ComputeMoa.C(25):
> > MetaBalancer(CkMigrateMessage *m) : CBase_MetaBalancer(m) {
> > init();
}
> > ^
> >
> > In file included from .rootdir/charm-6.7.0/mpi-
> > crayxc/include/cklocation.h(31),
> > from
> .rootdir/charm-6.7.0/mpi-crayxc/include/ckarray.h(29),
> > from
> .rootdir/charm-6.7.0/mpi-crayxc/include/charm++.h(1039),
> > from src/Node.h(16),
> > from src/ComputeMoa.C(25):
> > .rootdir/charm-6.7.0/mpi-crayxc/include/MetaBalancer.h(191): error:
> > no instance of constructor "CBaseT1<Parent, CProxy_Derived>::CBaseT1
> > [with Parent=Group, CProxy_Derived=CProxy_MetaBalancerRedn]"
> matches
> > the argument list In file included from .rootdir/charm-6.7.0/mpi-
> > crayxc/include/cklocation.h(31),
> > from
> .rootdir/charm-6.7.0/mpi-crayxc/include/ckarray.h(29),
> > from
> .rootdir/charm-6.7.0/mpi-crayxc/include/charm++.h(1039),
> > from src/Node.h(16),
> > from src/ComputeMoa.C(25):
> > argument types are: (CkMigrateMessage *) In file
> > included from .rootdir/charm-6.7.0/mpi- crayxc/include/cklocation.h(31),
> > from
> .rootdir/charm-6.7.0/mpi-crayxc/include/ckarray.h(29),
> > from
> .rootdir/charm-6.7.0/mpi-crayxc/include/charm++.h(1039),
> > from src/Node.h(16),
> > from src/ComputeMoa.C(25):
> > MetaBalancerRedn(CkMigrateMessage *m) :
> > CBase_MetaBalancerRedn(m) {init();}
> >
> > ^
> >
> > compilation aborted for src/ComputeMoa.C (code 2)
> > make: *** [obj/ComputeMoa.o] Error 2
> >
> >
> > CLASSIFICATION: UNCLASSIFIED
>
>
> CLASSIFICATION: UNCLASSIFIED
CLASSIFICATION: UNCLASSIFIED
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