From: Bennion, Brian (bennion1_at_llnl.gov)
Date: Mon May 04 2015 - 10:42:12 CDT
I should also have asked which version of namd you are running. It seems that autoimd is calling namd with options that are needed when charmrun executes namd.
1. please state the version and type of namd that you have installed
2. what is the output of:
which namd2
or
locate namd2
3. is the namd2 command an alias that has the +p1 argument?
Brian
________________________________________
From: Ern Seang Ong [Ern.Ong_at_student.adfa.edu.au]
Sent: Sunday, May 03, 2015 9:14 PM
To: namd-l_at_ks.uiuc.edu; namd-l-digest_at_ks.uiuc.edu; Bennion, Brian
Subject: RE: namd-l digest V1 #1668
Hi Brian,
Thanks for the reply. I'm using VMD 1.9.2. The error log is as in the following.
Attempt to connnect to the simulation timed out!
NAMD Logfile:
Reason: FATAL ERROR: Unknown command-line option +p1
-type
(procedure "AutoIMD::autoconnect" line 15)
invoked from within
"AutoIMD::autoconnect"
invoked from within
".autoimd.win.controls.connect invoke"
("uplevel" body line 1)
invoked from within
"uplevel #0 [list $w invoke]"
(procedure "tk::ButtonUp" line 24)
invoked from within
"tk::ButtonUp .autoimd.win.controls.connect"
(command bound to event)
Cheers,
Ernest
------------------------------
Date: Fri, 1 May 2015 16:00:35 +0000
From: "Bennion, Brian" <bennion1_at_llnl.gov>
Subject: namd-l: RE: Problems in running AutoIMD
Hello
What version of vmd are you using? Can you post the entire error log?
Sometimes there is another error message deeper in the output. Sometimes it
is a an error about missing parameters.
Brian
________________________________
From: owner-namd-l_at_ks.uiuc.edu [owner-namd-l_at_ks.uiuc.edu] on behalf of Ern
Seang Ong [Ern.Ong_at_student.adfa.edu.au]
Sent: Thursday, April 30, 2015 9:33 PM
To: namd-l_at_ks.uiuc.edu
Subject: namd-l: Problems in running AutoIMD
Hi,
I have been trying to run AutoIMD but there is an error kept popping out
?Error connecting to localhost on port XXXX?. In the error log, it says
?Reason: FATAL ERROR: Unknown command-line option +p1?. Can anyone please help
to solve this?
Thank you.
Ernest
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________________________________
UNSW AUSTRALIA
UNSW CANBERRA AT THE AUSTRALIAN DEFENCE FORCE ACADEMY
PO Box 7916, CANBERRA BC 2610, Australia
Web: http://unsw.adfa.edu.au
CRICOS Provider no. 00098G
This message is intended for the addressee named and may contain confidential information. If you are not the intended recipient, please delete it and notify the sender. Views expressed in this message are those of the individual sender and are not necessarily the views of UNSW.
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