warnings while using amber files

From: amin_at_imtech.res.in
Date: Thu Dec 25 2014 - 05:14:20 CST

 

Dear all,

I am trying to run a simulation with amber prmtop and inpcrd files made
using tleap. I have used amber ff14sb force field. In the log file I get
the following warnings:

PARM file in AMBER 7 format
Warning: Skipping ATOMIC_NUMBER in parm file while seeking MASS.
Warning: Skipping SCEE_SCALE_FACTOR in parm file while seeking SOLTY.
Warning: Skipping SCNB_SCALE_FACTOR in parm file while seeking SOLTY.
Warning: Encounter 10-12 H-bond term
Warning: CORRECTION OF ZERO MASS ATOMS TURNED OFF BECAUSE LONE PAIRS ARE
USED
Warning: Found 32738 H-H bonds.

Then I get many lines where only "ERROR" is written.

Can someone please help me with this?

Regards.

Amin.
 

This archive was generated by hypermail 2.1.6 : Thu Dec 31 2015 - 23:21:30 CST