how to fix the problem

From: Liqun Zhang (
Date: Fri Nov 14 2014 - 17:19:37 CST

Dear all:

I have run a simulation for a protein in lipid system for a very long time.
In order to remove the pbc effect, I unwrapped the trajectory for protein
and the lipids using pbc commands in vmd program, which made part of the
protein broken in the z-direction. But when I tried to use join command to
join the broken part to the major part of the protein, the major part of
the protein instead was shifted to the broken part. I am not sure how to
solve the problem. Can I get some suggestion here? Thank you very much.



This archive was generated by hypermail 2.1.6 : Thu Dec 31 2015 - 23:21:22 CST