running a calculation during simulation

Date: Mon Oct 20 2014 - 16:08:12 CDT


I am looking to use the coordinates of a selection of atoms in my
simulation at a sampling rate considerably higher than that of the
dcdfreq. I was wondering if there was a way to run a tcl script
concurrently with the simulation. Specifically, I am trying to calculate a
one-dimensional density of atoms averaged more frequently than I am
writing all the atoms to the dcd.


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