From: Z (shenzldlut_at_gmail.com)
Date: Mon Oct 06 2014 - 05:26:21 CDT
Dear all,
I want to use ABF to calculate PMF,so I am running simulation with
colvars. However, the NAMD2.8 said :
TCL: Setting parameter colvars to on
FATAL ERROR: Setting parameter colvars from script failed!
FATAL ERROR: Setting parameter colvars from script failed!
FATAL ERROR: Setting parameter colvars from script failed!
FATAL ERROR: Setting parameter colvars from script failed!
FATAL ERROR: Setting parameter colvars from script failed!
my colvars flie :
colvarsTrajFrequency 100
colvarsRestartFrequency 1000
colvar {
name IonDistance
width 0.1
lowerboundary -45.6
upperboundary 45.6
lowerWallConstant 10.0
upperWallConstant 10.0
distanceZ {
main {
atomsFile ./main_atom.pdb
atomsCol B
atomsColValue 1.0
}
ref {
atomsFile ./ref_atom_2.pdb
atomsCol O
atomsColValue 1.0
}
}
}
abf {
colvars IonDistance
fullSamples 100
hideJacobian
}
I want to know which parameter has problem?
Thanks!
P.S.
There are tclForces parameters in my conf flie.
-- Z E-mail:shendlut_at_gmail.com
This archive was generated by hypermail 2.1.6 : Thu Dec 31 2015 - 23:21:17 CST