Monitoring progress of an ongoing molecular dynamics simulation

From: Ivan Gregoretti (ivangreg_at_gmail.com)
Date: Fri Mar 07 2014 - 08:08:11 CST

Hello everybody,

Could you share the way you monitor progress of an ongoing MD
simulation? ie What simulation step, roughly?

We need to monitor progress using command line tools, not GUI. It
would be trivial with unix tools if the output weren't binary.

I guess that a solution might involve VMD in text mode but all
suggestions are welcome.

Thank you,

Ivan

Ivan Gregoretti, PhD
Bioinformatics

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