harmonic restraints between multiple atom pairs

From: Neelanjana Sengupta (senguptan_at_gmail.com)
Date: Mon Nov 03 2014 - 22:42:33 CST

Dear All,

I would like to apply harmonic restraints between multiple pairs of atoms
in a complex system I am simulating. The force constant applied between
each pair is the same.

Is there an efficient way to specify this within the colvars module? (The
messy way would be to specify each atom pair, but if I have a fairly large
number of pairs, this would be tacky..).

Thanks in advance.


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