Reg: dielectric constant calculations in NAMD

From: Akshay Bhatnagar (
Date: Fri Oct 31 2014 - 00:51:24 CDT

Dear all

Is it possible to calculate dielectric constant for a homogeneous system in
NAMD. I have a cystine surrounded by other amino acids and water molecules.
I want the cystine to be considered as a solute and other molecules as
solvent , i want to calculate the dielectric constant of this solvent
(other amino acids and water molecules)

Thank you for your concern.

With Regards
Akshay Bhatnagar
PhD Student
BITS Pilani Hyderabad Campus

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