Nucleic acid stains parameters

From: Sebastián Gutiérrez (
Date: Mon Aug 25 2014 - 10:37:04 CDT

 Dear NAMD Users,

i'm looking for CHARMM-compatible parameters for the following molecules:

-Acridine orange
-ethidium bromide
-ethidium homodimer-2
-evans blue
-hexidium iodide
-indocyanine green
-methylene blue
-propidium iodide
-nuclear yellow

I'm asking only in case someone already has any of these, since i'm going
to try generating these parameters with the ffTK plugin (for VMD).


Sebastián E. Gutiérrez Maldonado
Graduate student
Computational Biology Lab (DLab)
Fundación Ciencia & Vida
Av. Zañartu 1482, Ñuñoa, Santiago

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