From: sananda chatterjee (
Date: Tue Jul 22 2014 - 17:08:56 CDT

Dear all,
I have performed a MD simulation in NAMD using AMBER force field. I next
analysed the energy plot using NAMD plot using the NAMD log file but i am
getting positive van der Waals energy ranging from +9500 to +10520.Is there
anything wrong having positive values for VDW . The electrostatic and the
total energy of the system is negative and is around -35000 and -25000
respectively. Thanks in advance.
Regards Sananda

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