coordinates in namd

From: Research Jubilant (
Date: Mon Jun 02 2014 - 23:34:52 CDT

Hello everyone,

I have a 200 ns long trajectory and would like to pick two (100ns and
200ns) conformations and start simulations from each of them. While I use
the restart options in namd, I don't have any problem starting from 200ns
(other words, it is just continuing). But when I tried with 100ns, I am not
sure how to include the coordinates. When I used 100ns.pdb in 'coordinates'
option my restart files override this option. I don't have a set of restart
files for 100ns conformation.

Help me with this.



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