From: Giacomo Fiorin (giacomo.fiorin_at_gmail.com)
Date: Tue Mar 11 2014 - 16:19:24 CDT
Hello Abir, yes: there is a section in the user's guide that deals with
combinations of colvars, and another section that deals with harmonic
potentials to bias the simulations.
Giacomo
On Tue, Mar 11, 2014 at 5:06 PM, Abir Ganguly <7.someone.iitd_at_gmail.com>wrote:
> Dear NAMD users,
>
> I was wondering if it is possible to define a collective variable that is
> the difference between two cartesian distances or angles using the colvar
> module? My goal is to perform umbrella sampling simulations along that
> particular collective coordinate.
>
> Thanks so much!
>
>
> Best,
>
> Abir
>
>
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