Assigning atom serial number after the first 99999 atoms

From: Shyno Mathew (sm3334_at_columbia.edu)
Date: Fri Aug 30 2013 - 11:07:49 CDT

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Dear all,
I am trying to set up some free energy calculations, this is my first time
doing this. So, I am trying to set up the system as mentioned in the
tutorial:
"A tutorial to set up alchemical free energy perturbation calculations in
NAMD"

As the first step, I am writing the .fep input file which contains all toms
(appearing, disappearing and non-changing atoms).
However, my system is much bigger and when I try to write the .fep file, I
am not sure how to assign atom serial number after the first 99999 atoms.
For this system, I have another 8233 atoms.

thanks in advance for your help,

Shyno

-- 
Shyno Mathew
PhD student
Department of Chemical Engineering
Columbia University

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