Re: problem in finding atom types for ligand

From: Kenno Vanommeslaeghe (
Date: Tue Aug 27 2013 - 11:02:10 CDT

I can assure you CGenFF works with all NAMD versions I tried over the last
5 years or so. Please try the following:

On 08/27/2013 07:54 AM, Mamon Hatmal wrote:
> Hi Everyone,
> I'm a new user of the NAMD, I'm trying to simulate a protein with ligand. I have a problem in finding the atom types and parameters of the ligand which are compatible with NAMD. I used swissparam and CGEN FF, but in both programs the produced atom types are not compatible with NAMD.
> Thanks in advance,
> Ma'mon

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