RMSD calculation

From: Vibhor Agrawal (vibhora_at_g.clemson.edu)
Date: Fri Aug 02 2013 - 21:44:47 CDT

Dear Namd Users

I have a small doubt the way RMSD calculation are done in NAMD.
i have a trajectory of 783 frames and when I try to calculate the RMSD
,Calculations are based on the first frame as a reference. Is it possible
to calculate the RMSD based with the pdb structures as a reference.



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