Re: dcd to pdb for trajectory analysis

From: Gabriel Jara (gabriel.fcq.unc.ar_at_gmail.com)
Date: Thu Jul 11 2013 - 09:43:16 CDT

HI,

do you try with catdcd?

Gaby

On Thu, Jul 11, 2013 at 9:40 AM, oguz gurbulak <gurbulakoguz_at_yahoo.com>wrote:

> Dear NAMD users,
>
> I want to generate pdb files which include the same number of records from
> a dcd file for data analysis. For example my dcd file has 4000 records. And
> I want to produce four pdb files contain 1000 records (1.pdb, 2.pdb 3.pdb
> and 4.pdb). How can I divide a dcd file into the pdb files easily and
> quickly ?
>
> Thanks for your help.
> 

-- 
Dr. Gabriel E. Jara
Laboratorio de Modelado Molecular
INQUIMAE - Instituto de Química-Física de Materiales, Ambiente y Energía
DQIAyQF - Departamento de Inorgánica, Analítica y Química-Física
FCEyN - Facultad de Ciencias Exactas y Naturales
Universidad de Buenos Aires
Intendente Güiraldes 2160 - Hall 2, 1er piso.
Ciudad Universitaria - C1428EGA
Buenos Aires - Argentina
Tel: +54 11 4576 3378 /79 /80, int. 123
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