About NAMD

From: Dennis Lam (Dennis.Lam_at_cix.csi.cuny.edu)
Date: Tue Jun 25 2013 - 11:20:15 CDT

Hello,

I have this problem when I run a job in NAMD using SMD.

ERROR: Error on renaming file smd_4_2.restart.coor to smd_4_2.restart.coor.old: Invalid cross-device link
FATAL ERROR: Unable to open binary file smd_4_2.restart.coor: File exists
[0] Stack Traceback:
  [0:0] CmiAbort+0x95 [0xbb9dc5]
  [0:1] _Z8NAMD_errPKc+0x9d [0x582a99]
  [0:2] _ZN6Output17write_binary_fileEPciP6Vector+0x19a [0x9b601a]
  [0:3] _ZN6Output26output_restart_coordinatesEP6Vectorii+0x1a1 [0x9b5e61]
  [0:4] _ZN6Output10coordinateEiiP6VectorP11FloatVectorR7Lattice+0x164 [0x9b5adc]
  [0:5] _ZN24CkIndex_CollectionMaster39_call_receivePositions_CollectVectorMsgEPvP16CollectionMaster+0x135 [0x59359f]
  [0:6] CkDeliverMessageFree+0x21 [0xaee919]
  [0:7] _Z15_processHandlerPvP11CkCoreState+0x7ba [0xaed92a]
  [0:8] CsdScheduleForever+0xb6 [0xbc1196]
  [0:9] CsdScheduler+0x1c [0xbc0d74]
  [0:10] _ZN7BackEnd7suspendEv+0xb [0x58b0a3]
  [0:11] _ZN9ScriptTcl7Tcl_runEPvP10Tcl_InterpiPPc+0x19a [0xa2ad68]
  [0:12] TclInvokeStringCommand+0x88 [0xbf8a68]
  [0:13] [0xbfb580]
  [0:14] [0xbfc966]
  [0:15] Tcl_EvalEx+0x16 [0xbfd146]
  [0:16] Tcl_FSEvalFileEx+0x151 [0xc5ef51]
  [0:17] Tcl_EvalFile+0x2e [0xc5f10e]
  [0:18] _ZN9ScriptTcl4loadEPc+0x10 [0xa29f2a]
  [0:19] _Z18after_backend_initiPPc+0x407 [0x586917]
  [0:20] main+0x3a [0x5864da]
  [0:21] __libc_start_main+0xfd [0x2aaaaba1ccdd]
  [0:22] _ZNSt8ios_base4InitD1Ev+0x72 [0x54119a]

Any suggestions?

Thanks,
Dennis

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