Protein-ligand simulation

From: James Starlight (
Date: Mon Jun 24 2013 - 06:51:46 CDT

Dear Namd users!

I'd like to perform simulation of the protein-ligand complex ( In that case
I'll deal with the water-soluble diffusional ligand). Could you provide me
with some tutorial for such simulation ? ( in particular I'm looking for
additional parameters which i should specify in the conf files).

Thanks for help,


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