Amorphous Structure code or builder

From: Rawan Al Nsour (
Date: Thu Feb 28 2013 - 14:47:14 CST

Dear All,

I am trying to get an amorphous configuration for monolayer membrane
polymer. I used the both prescribed ways to have amorphous structure for
polymers: melting at high temperature and reducing the vdw atoms radii to
avoid the unfavorable vdw repulsive interactions. Unfortunately, the
configuration still doesnt look like amorphous. I am wonderning if there is
a code has been used by NAMD or VMD users. or if there is amorphous builder
in vmd?


Rawan Al Nsour
Ph.D. Student
Department of Mechanical and Nuclear Engineering
School of Engineering, Virginia Commonwealth University
401 W. Main Street, Room E3216
P.O. Box 843015
Richmond, Virginia 23284-3015

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