From: Frank Thommen (structures-it_at_embl-heidelberg.de)
Date: Sat Nov 30 2013 - 14:51:55 CST
I'm currently having probleme building charm++ (6.4.0) with MPI for namd
2.9 on an CentOS 6.2 cluster running the LSF queueing system. As MPI
version we are using PMPI (Platform MPI), which has been delivered with
# which mpiCC
# mpiCC --version
g++ (GCC) 4.4.6 20110731 (Red Hat 4.4.6-3)
Copyright (C) 2010 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
When running the charm++ build command (`env
MPICXX=/opt/platform_mpi/bin/mpiCC ./build charm++ mpi-linux-x86_64
--with-production`) the configure step reports the following checks as
checking "whether __int64 works"... "no"
checking "whether ucontext uses uc_regs"... "no"
checking "whether ucontext has pointer (v_regs) of vector type"... "no"
checking "whether GCC IA64 assembly works"... "no"
checking "whether PPC assembly works"... "no"
And finally exits with an error:
Error: Can not compile a MPI program
*** Please find detailed output in charmconfig.out ***
gmake: *** [conv-autoconfig.h] Error 1
gmake: Leaving directory
gmake: *** [headers] Error 2
(The complete build output can be seen on http://pastebin.com/nBS62eWm)
In tmp/charmconfig.out above checks seem to relate to the following errors:
test.cpp:2: error: '__int64' does not name a type
test.cpp:6: error: 'struct mcontext_t' has no member named 'uc_regs'
test.cpp:2: error: expected constructor, destructor, or type conversion
before '*' token
test.cpp:4: Error: invalid character '=' in operand 1
test.cpp:4: Error: no such instruction: `eieio'
(The complete content of tmp/charmconfig.out can be found on
Any ideas about what is going wrong and/or how this can be fixed, is
Thank you very much in advance
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