replica exchange and replica.namd

From: Siri Søndergaard (
Date: Tue Nov 06 2012 - 20:57:18 CST

I'm trying to do replica exchange on the Alanine example (mentioned under
"Replica exchange simulations" on the namd webpage) but I'm getting the
error message:

 Reason: FATAL ERROR: couldn't read file "../replica.namd": no such file or
    while executing
"source ../replica.namd "
    invoked from within
"if { ! [catch numPes] } { source ../replica.namd }"
    (file "job0.conf" line 5)

What is the replica.namd file and how do I set it up?


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