From: Aron Broom (broomsday_at_gmail.com)
Date: Thu Oct 11 2012 - 06:33:53 CDT
In most common forcefields (e.g. CHARMM, AMBER) all ranges of secondary
structure are possible, so there is no reason why such a transition
shouldn't be possible.
On Thu, Oct 11, 2012 at 12:51 AM, <ishiikai08_at_yahoo.co.jp> wrote:
> Dear NAMD Users
> I compute pulling the protein which has helix structures.
> When I pull the protein, some helix structures break and change to loop
> In NewCartoon, it looks like that heavy coil changes thin cord.
> Instead, I wonder if loop structures changes helix structures in NAMD
> Is the loop structures able to change the helix structures in NAMD
> If this is a poor question, I'm sorry.
> I'm beginner of NAMD and English.
> Ishii Kai
-- Aron Broom M.Sc PhD Student Department of Chemistry University of Waterloo
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