From: Thomas Evangelidis (tevang3_at_gmail.com)
Date: Wed Sep 26 2012 - 17:15:00 CDT
Greetings,
I have compiled mpich-1.4.1p1 using the Intel compilers. When I try to
compile charmm++ the following command line completes successfully:
./build charm++ mpi-linux-x86_64 -j8 --basedir /usr/local/mpich-1.4.1p1_icc
-O
but when I add the icc flag to use the Intel compiler I get:
checking "whether build on MPI"... "yes"
checking "whether need to specify MPI library"... "yes"
checking "whether -lmpich"... "no"
checking "whether -lmpi"... "no"
Error: can not find mpi library
*** Please find detailed output in charmconfig.out ***
My charmmconfig.out has the following stack trace:
### whether -lmpich
#include "mpi.h"
int main(int argc, char **argv)
{
MPI_Init(&argc, &argv);
}
icpc -fpic -I../include -I. -fno-stack-protector
-I/usr/local/mpich-1.4.1p1_icc/include -c test.cpp -o test.o -lmpich
icpc -shared-intel -o testlink test.o -L/usr/local/mpich-1.4.1p1_icc/lib
-lmpich
/usr/local/mpich-1.4.1p1_icc/lib/libmpich.a(init.o): In function `MPI_Init':
init.c:(.text+0x6e): undefined reference to `MPL_env2str'
init.c:(.text+0x268): undefined reference to `MPL_env2bool'
/usr/local/mpich-1.4.1p1_icc/lib/libmpich.a(initthread.o): In function
`MPI_Init_thread':
initthread.c:(.text+0x113): undefined reference to `MPL_env2bool'
/usr/local/mpich-1.4.1p1_icc/lib/libmpich.a(mpiu_thread.o): In function
`MPIU_Thread_create':
mpiu_thread.c:(.text+0x5f): undefined reference to `pthread_create'
/usr/local/mpich-1.4.1p1_icc/lib/libmpich.a(param_vals.o): In function
`MPIR_Param_init_params':
param_vals.c:(.text+0x10): undefined reference to `MPL_env2int'
param_vals.c:(.text+0x28): undefined reference to `MPL_env2int'
param_vals.c:(.text+0x40): undefined reference to `MPL_env2int'
param_vals.c:(.text+0x58): undefined reference to `MPL_env2int'
param_vals.c:(.text+0x70): undefined reference to `MPL_env2int'
/usr/local/mpich-1.4.1p1_icc/lib/libmpich.a(param_vals.o):param_vals.c:(.text+0x88):
more undefined references to `MPL_env2int' follow
/usr/local/mpich-1.4.1p1_icc/lib/libmpich.a(param_vals.o): In function
`MPIR_Param_init_params':
param_vals.c:(.text+0x328): undefined reference to `MPL_env2bool'
param_vals.c:(.text+0x340): undefined reference to `MPL_env2bool'
param_vals.c:(.text+0x358): undefined reference to `MPL_env2bool'
param_vals.c:(.text+0x370): undefined reference to `MPL_env2bool'
param_vals.c:(.text+0x388): undefined reference to `MPL_env2bool'
/usr/local/mpich-1.4.1p1_icc/lib/libmpich.a(param_vals.o):param_vals.c:(.text+0x3a0):
more undefined references to `MPL_env2bool' follow
/usr/local/mpich-1.4.1p1_icc/lib/libmpich.a(param_vals.o): In function
`MPIR_Param_init_params':
param_vals.c:(.text+0x448): undefined reference to `MPL_env2int'
param_vals.c:(.text+0x460): undefined reference to `MPL_env2int'
param_vals.c:(.text+0x478): undefined reference to `MPL_env2bool'
param_vals.c:(.text+0x490): undefined reference to `MPL_env2bool'
param_vals.c:(.text+0x4a8): undefined reference to `MPL_env2bool'
param_vals.c:(.text+0x4c0): undefined reference to `MPL_env2bool'
param_vals.c:(.text+0x4d8): undefined reference to `MPL_env2bool'
/usr/local/mpich-1.4.1p1_icc/lib/libmpich.a(param_vals.o):param_vals.c:(.text+0x4f0):
more undefined references to `MPL_env2bool' follow
/usr/local/mpich-1.4.1p1_icc/lib/libmpich.a(param_vals.o): In function
`MPIR_Param_init_params':
param_vals.c:(.text+0x508): undefined reference to `MPL_env2int'
param_vals.c:(.text+0x520): undefined reference to `MPL_env2int'
param_vals.c:(.text+0x538): undefined reference to `MPL_env2int'
param_vals.c:(.text+0x550): undefined reference to `MPL_env2int'
param_vals.c:(.text+0x568): undefined reference to `MPL_env2str'
param_vals.c:(.text+0x580): undefined reference to `MPL_env2str'
param_vals.c:(.text+0x598): undefined reference to `MPL_env2str'
param_vals.c:(.text+0x5b0): undefined reference to `MPL_env2str'
param_vals.c:(.text+0x5c8): undefined reference to `MPL_env2str'
/usr/local/mpich-1.4.1p1_icc/lib/libmpich.a(param_vals.o):param_vals.c:(.text+0x5e0):
more undefined references to `MPL_env2str' follow
/usr/local/mpich-1.4.1p1_icc/lib/libmpich.a(param_vals.o): In function
`MPIR_Param_init_params':
param_vals.c:(.text+0x5f8): undefined reference to `MPL_env2int'
param_vals.c:(.text+0x610): undefined reference to `MPL_env2int'
param_vals.c:(.text+0x628): undefined reference to `MPL_env2bool'
param_vals.c:(.text+0x640): undefined reference to `MPL_env2bool'
param_vals.c:(.text+0x658): undefined reference to `MPL_env2bool'
param_vals.c:(.text+0x670): undefined reference to `MPL_env2bool'
param_vals.c:(.text+0x688): undefined reference to `MPL_env2bool'
/usr/local/mpich-1.4.1p1_icc/lib/libmpich.a(param_vals.o):param_vals.c:(.text+0x6a0):
more undefined references to `MPL_env2bool' follow
/usr/local/mpich-1.4.1p1_icc/lib/libmpich.a(param_vals.o): In function
`MPIR_Param_init_params':
param_vals.c:(.text+0x6ed): undefined reference to `MPL_env2range'
param_vals.c:(.text+0x70a): undefined reference to `MPL_env2range'
param_vals.c:(.text+0x727): undefined reference to `MPL_env2range'
param_vals.c:(.text+0x740): undefined reference to `MPL_env2range'
/usr/local/mpich-1.4.1p1_icc/lib/libmpich.a(mpid_init.o): In function
`MPID_Init':
mpid_init.c:(.text+0x172): undefined reference to `MPL_env2bool'
/usr/local/mpich-1.4.1p1_icc/lib/libmpich.a(mpid_vc.o): In function
`MPIDI_Populate_vc_node_ids':
mpid_vc.c:(.text+0xcd0): undefined reference to `MPL_env2int'
mpid_vc.c:(.text+0xce2): undefined reference to `MPL_env2int'
Any idea why this is happening?
Thomas
--
======================================================================
Thomas Evangelidis
PhD student
University of Athens
Faculty of Pharmacy
Department of Pharmaceutical Chemistry
Panepistimioupoli-Zografou
157 71 Athens
GREECE
email: tevang_at_pharm.uoa.gr
tevang3_at_gmail.com
website: https://sites.google.com/site/thomasevangelidishomepage/
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