From: Aron Broom (broomsday_at_gmail.com)
Date: Fri Aug 31 2012 - 13:57:31 CDT
this sounds like a general unix problem. you need to ensure that directory
is included when the compiler is looking for header files. I'm not sure
exactly how this is done, maybe by setting a $INCLUDE_DIR variable in your
shell, or probably there is something you can add to the compile line, for
instance ./build [your stuff here] -I [directory where that file is].
Anyway, I think it's a simple enough problem, just needs some googling or
someone with more unix experience than me.
On Thu, Aug 30, 2012 at 8:59 AM, candy deck <candy76_at_hotmail.co.uk> wrote:
> Dear NAMD user.
> I'm trying to install NAMD 2.8 and patching PLUMED1.3
> Here is what I've done :
> tar xzf NAMD_2.8_Source.tar.gz
> cd NAMD_2.8_Source
> tar xf charm-6.3.2.tar
> cd charm-6.3.2
> Build and test the Charm++/Converse library (network version):
> ./build charm++ net-linux-x86_64 --no-build-shared --with-production
> cd net-linux-x86_64/tests/charm++/megatest
> make pgm
> ./charmrun ++local +p4 ./pgm (also try running on multiple nodes)
> cd ../../../../..
> Download and install TCL and FFTW libraries:
> tar xzf fftw-linux-x86_64.tar.gz
> mv linux-x86_64 fftw
> tar xzf tcl-linux-x86_64.tar.gz
> mv linux-x86_64 tcl
> Set up build directory and compile:
> network version: ./config Linux-x86_64-g++ --charm-arch net-linux-x86_64
> *apply the patch: ./plumedpatch_namd_2.8.sh -patch *
> cd Linux-x86_64-g++
> And here, things like :
> src/ComputeMgr.C:83:21: fatal error: metadyn.h: No such file or directory
> compilation terminated
> are showing up...
> However, metadyn.h exists...
> if I do ls -l , I obtain :
> lrwxrwxrwx 1 candy candy 36 2012-08-30 13:55 metadyn.h ->
> Can someone help ??
> Thanks a lot
-- Aron Broom M.Sc PhD Student Department of Chemistry University of Waterloo
This archive was generated by hypermail 2.1.6 : Tue Dec 31 2013 - 23:22:29 CST