vel.dcd.pdb file : CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ATOM 1 N1A SET A 0 0.233 -0.230 0.038 0.00 0.00 SET ATOM 2 C2A SET A 0 -0.283 -0.115 -0.073 0.00 0.00 SET ATOM 3 C3A SET A 0 -0.210 0.074 -0.214 0.00 0.00 SET ATOM 4 C4A SET A 0 -0.098 -0.406 -0.061 0.00 0.00 SET ATOM 5 C8A SET A 0 -0.140 -0.080 0.142 0.00 0.00 SET ATOM 6 C5A SET A 0 -0.118 0.287 -0.110 0.00 0.00 SET ATOM 7 C7A SET A 0 -0.066 0.075 -0.049 0.00 0.00 SET ATOM 8 C6A SET A 0 -0.039 0.091 -0.361 0.00 0.00 SET ATOM 9 C9A SET A 0 -0.231 0.113 -0.098 0.00 0.00 SET ATOM 10 C10A SET A 0 -0.075 0.119 0.155 0.00 0.00 SET ATOM 11 C14A SET A 0 -0.027 0.004 0.105 0.00 0.00 SET ...... .... .... velocity.vel ( ascii file ) : REMARK FINAL VELOCITIES WRITTEN BY NAMD AT TIMESTEP 100000 ATOM 1 N1A SET 0 4.774 -4.701 0.767 1.00 0.00 SET NY ATOM 2 C2A SET 0 -5.796 -2.344 -1.492 1.00 0.00 SET CY ATOM 3 C3A SET 0 -4.292 1.514 -4.384 1.00 0.00 SET CA ATOM 4 C4A SET 0 -2.001 -8.304 -1.240 1.00 0.00 SET CD ATOM 5 C8A SET 0 -2.858 -1.643 2.912 1.00 0.00 SET CD ATOM 6 C5A SET 0 -2.420 5.879 -2.258 1.00 0.00 SET CD ATOM 7 C7A SET 0 -1.342 1.542 -1.007 1.00 0.00 SET CD ATOM 8 C6A SET 0 -0.807 1.860 -7.376 1.00 0.00 SET CA ATOM 9 C9A SET 0 -4.734 2.314 -2.003 1.00 0.00 SET CA ATOM 10 C10A SET 0 -1.542 2.444 3.160 1.00 0.00 SET CD ATOM 11 C14A SET 0 -0.547 0.073 2.144 1.00 0.00 SET CD .......... ......... ...... Vel.dcd.pdb ( pbc wrap –all ) : CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ATOM 1 N1A SET A 0 0.233 0.770 0.038 0.00 0.00 SET ATOM 2 C2A SET A 0 0.717 0.885 0.927 0.00 0.00 SET ATOM 3 C3A SET A 0 0.790 0.074 0.786 0.00 0.00 SET ATOM 4 C4A SET A 0 0.902 0.594 0.939 0.00 0.00 SET ATOM 5 C8A SET A 0 0.860 0.920 0.142 0.00 0.00 SET ATOM 6 C5A SET A 0 0.882 0.287 0.890 0.00 0.00 SET ATOM 7 C7A SET A 0 0.934 0.075 0.951 0.00 0.00 SET ATOM 8 C6A SET A 0 0.961 0.091 0.639 0.00 0.00 SET ATOM 9 C9A SET A 0 0.769 0.113 0.902 0.00 0.00 SET ATOM 10 C10A SET A 0 0.925 0.119 0.155 0.00 0.00 SET ATOM 11 C14A SET A 0 0.973 0.004 0.105 0.00 0.00 SET .......... ....... ........