RMSD trajectory

From: flavio seixas (oivalf_nix_at_yahoo.com)
Date: Fri Nov 18 2011 - 14:09:15 CST

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Hi all.

My question is: What is the best choice to calculate RMSD-trajectory plot for a simulation?

The psf file plus the dcd file or the pdb file plus the dcd file?

Or does not matter?

Regards,

Flavio

• Next message: Joshua Adelman: "Re: RMSD trajectory"
• Previous message: David Brandon: "'Hands-On' Workshop on Computational Biophysics using VMD and NAMD, February 11-15, 2012 in Urbana, Illinois"
• In reply to: Anthony Rey: "Re: Bonds are too long after simulation"
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• Reply: Joshua Adelman: "Re: RMSD trajectory"
• Reply: Nikolaos Glykos: "Re: RMSD trajectory"
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