Re: question on residue rmsd.tcl

From: amit banerjee (
Date: Mon Jun 06 2011 - 00:18:48 CDT

Dear Ada,
Thanks for your reply, actually I wanted to know whether residue_rmsd.tcl script
runs for both water sphere and water box based generated trajectories.
Could you please help me out with the distance.tcl script. I was not able to run
the default script provided with the tutorial.

Thanks and Regards,

From: Ada Zhan <>
Sent: Fri, June 3, 2011 12:36:00 AM
Subject: RE: namd-l: question on residue rmsd.tcl

 Him Amit,

residue_rmsd.tcl runs for protein. It does nothing to do with water.


Date: Wed, 1 Jun 2011 20:49:17 -0700
Subject: namd-l: question on residue rmsd.tcl

Dear colleagues,
                         Please let me know whether residue_rmsd.tcl script will
run for water sphere trajectories? Becuase in the NAMD tutorial it is given for
water box models.
Yours truly,

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