From: saman amiri (saman_amiri00_at_yahoo.com)
Date: Thu May 26 2011 - 07:37:04 CDT
I am going to perform MD simulations using SWM4 water model. As mentioned before, NAMD Supports CHARMM Drude polarizable force field. However, there is no documentation regarding how to create PSF and PDB files for such a simulation. I used CHARMM toppar file "toppar_drude_master_c36a1.str " along with VMD to generate the PSF and PDB file but, it dose not work at all. The resulted files are not OK. Is there any comment about such a problem? Can someone please let me know how to deal with the problem.
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