NAMD question

From: snoze pa (
Date: Fri May 13 2011 - 16:34:16 CDT

Dear NAMD Users,

I want to start a MD simulation. In my system only 30 residues are part of
membrane and rest of the 400 residues are not part of the membrane. Shall I
use membrane in my simulation or simply a water box will help. On other hand
I can remove 30 residue segment and use water box method. But I would
prefer to use simulation with membrane.

I would highly appreciate your suggestions

Thanks in advance and have a great weekend.


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