Re: Generalized Born implicit solvent model in 2.8b1

From: David Tanner (
Date: Wed Mar 30 2011 - 12:04:20 CDT

There are is no immediate plan to implement the SA term.

David E. Tanner
Theoretical and Computational Biophysics Group
3159 Beckman Institute
University of Illinois at Urbana-Champaign
405 N. Mathews
Urbana, IL 61801

On Mar 30, 2011, at 9:40 AM, Enrico Guarnera wrote:

Hi there,

Is the newly implemented GB implicit solvent model in NAMD 2.8b1
containing a solvent accessible surface term to mimic the non-polar
hydrophobic effect? If not, is there any intention to implement it in
a future versions of NAMD?


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