Net forces on each atom can be written to PDB in NAMD 2.8b1

From: oguz gurbulak (
Date: Mon Mar 28 2011 - 04:06:05 CDT

I’ve just learned that  it’s possible to get a force output file in NAMD 2.8b1.  I installed NAMD 2.8b1 and wanted to get the force output file. I got the net forces on each atom as a DCD trajectory file. And now I also want to do it using the Tcl output command “output withforces basename” and get a final PDB file. But I haven’t got enough information about using Tcl output commands. Could you please help me to learn this procedure ? How can I do it ? Thank you very much for your attention. Kind regards.

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